antsMath –label-overlap-measures compared image labels by the measures in Arno Klein’s paper in 2009. Its usage is here:
antsLabelOverlapMeasures examples are here:
/Users/stnava/code/temp/advants-code/bin/antsMath -d 2 –label-overlap-measures all[/Users/stnava/code/temp/advants-code/ANTS/ExampleData/Frown.nii.gz,/Users/stnava/code/temp/advants-code/ANTS/ExampleData/Smile.nii.gz] -o antsLabelOverlapMeasuresTestOutput.txt
an output of LabelOverlapMeasures :
This is the overlap output for the first example.